Japan's animal cafes — the spots where you can sip coffee while an owl perches on your arm or an otter paddles past your table — are facing their biggest shake-up yet. The government has begun its first nationwide survey of the industry, prompted by growing worries about animal welfare, hygiene and public health.

The review, a desktop study that started this month, will map out how many facilities exist, which animals they keep, the conditions those animals live in, and how visitors handle them. Even cat and dog cafes are included. Environment Ministry official Takuya Ishikawa said Japan has no specific standards governing these cafes or the handling of many exotic species, and that welfare groups and government advisory experts have repeatedly flagged concerns.

The scrutiny is well founded, if recent research is anything to go by. A report by WWF and Hokkaido University found that of roughly 80 registered wildlife cafes in Tokyo and Osaka, about three-quarters were also licensed to sell animals. Researchers who visited 25 cafes counted more than 1,700 animals on display, 27% of them threatened species. Over 90% of the venues showed animals considered high-risk for injuring visitors through contact, and samples from four cafes tested positive for enterohemorrhagic E. coli — the strain that can cause bloody diarrhoea.

The bigger picture is striking too. A separate WWF report this month ranked Japan as the world's second-biggest importer of live reptiles and mammals by value in 2024, with risks ranging from invasive species released into the wild to zoonotic disease spread.

Not everyone in the industry is resistant. Syaina Nozaki, who runs the Owl Otter Cafe in Kamakura near Tokyo — a rescue-focused operation — welcomes tighter rules, saying Japan is clearly behind on welfare regulation and hoping new standards will separate ethical operators from profit-driven ones. The government also plans a public awareness campaign, admitting it hasn't done enough to explain the risks of close contact with exotic animals.

Why does this matter for travellers? Millions of tourists visit these cafes each year, and they remain a genuinely popular bucket-list experience in Tokyo, Osaka and beyond. But the sector is about to change. Some venues may close, others may change how (or whether) you can touch the animals, and a visit could soon look very different. If animal welfare matters to you, it's worth choosing operators that rescue rather than buy their animals — and being aware that a cute photo might come at a cost you can't see. Watch this space: Japan's first attempt to regulate the sector could reshape one of its most instagrammed attractions.